PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_5CD024A9E.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 78aa    MW: 8894.35 Da    PI: 10.3811
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_5CD024A9E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-321876259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                            Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Traes_3AS_5CD024A9E.1 18 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILITTYEGTHNHP 76
                           7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-35277IPR003657WRKY domain
SuperFamilySSF1182901.96E-291078IPR003657WRKY domain
PROSITE profilePS5081129.5051278IPR003657WRKY domain
SMARTSM007741.3E-361777IPR003657WRKY domain
PfamPF031061.3E-281976IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MRKARVSVRA RSEAPIIADG CQWRKYGQKM AKGNPCPRAY YRCTMATGCP VRKQVQRCAE  60
DRTILITTYE GTHNHPLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-25478174WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574521e-118AK357452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1053M21.
GenBankAK3648001e-118AK364800.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622142.11e-51PREDICTED: probable WRKY transcription factor 31 isoform X2
RefseqXP_015699307.18e-52PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5192e-51WRKY6_ARATH; WRKY transcription factor 6
TrEMBLA0A0E0MTV52e-53A0A0E0MTV5_ORYRU; Uncharacterized protein
STRINGORGLA01G0083800.13e-51(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-52WRKY family protein